2,3-di-O-phytanyl-sn-glycero-1-phosphoryl-3'-sn-glycerol 1'-phosphomethyl

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Lipid	2,3-di-O-phytanyl-sn-glycero-1-phosphoryl-3'-sn-glycerol 1'-phosphomethyl (DPhPGP-Me) Pubchem CID:4469581
Forcefield	GROMOS53a6
Code	Gromacs
Authors	D'Rozario R
Licence
Curator	Robert D'Rozario
Abstract	This is an Archaeal lipid found in the Purple Membrane I created the bilayer by setting up an 8x8 DPhPC leaflet then copy and rotate by 180 deg to get your bottom layer (all done with a bit of editconf!). You then have a more or less regular looking bilayer- add water, ~40 waters per lipid molecule to the box (solvating the tails of the lipid aswell) then simulated for 20 ns. Bilayer file is at the end of a 20ns run

References

D'Rozario R, (2009), [no doi], [no pubmed id] Notes: (unpublished)
Primary Experimental

Versions

Version	1
Topology	PGP-Me.itp 7745c7f7883c6b48dccaeaf1cfc83e3336821578 ffG53a6bonrob.itp 36493d8950b1c75ca0426acd1e5863a04b1382d8 ffG53a6nbrob.itp 4348ee99fdc3e56c2c0ea8ecb7b0e1498ccc53c5 ffG53a6rob.itp 94edd1010f2dee31d67b898d7516a7ca73d8f5bc
Parameters
PDB structure	DPhPGP-Me.pdb 2e8114d2610b91e40ec0c82ae3a29ed8ac3a9642
Bilayer structure	end-20ns-PGPG-ME.pdb a97f14d751a05e532ae3577ffe99566e4993f90a
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